Visualising cavities from a database

The script, utilities/visualise_cavity_ids/ may be used to write *.py files for visualisation in PyMol. Input IDs can be PDB identifiers or exact cavity identifiers from the database and the writing of surface points to these files may optionally be turned on, in addition to the writing of pseudocenters. PDB files associated with the cavities may also be optionally fetched, either from a URL by default or from a specified PDB mirror. Invoking the script with the option ‘-h’ shows the arguments required for usage.