RPluto Documentation

Use of this program is permitted solely for non-commercial purposes in accordance with the full conditions of use.

Changes incorporated in the latest version of the program are described here.

  1. Introduction
  2. Running RPluto
  3. Atom and molecule selection
    1. Base residues
    2. Atom selection
    3. Packing diagrams
    4. Packing slices
    5. Network expansion
    6. Editing the molecule list
  4. Geometric objects and measurements
  5. Hydrogen atom positions
  6. Bond type assignments
  7. Intermolecular contacts and hydrogen bonds
    1. Intermolecular contacts
    2. Hydrogen bonds
    3. Graph Sets
  8. Intermolecular interaction energies
  9. Approximate molecular symmetry detection
  10. Unit cell transformations
  11. Rendering options
    1. Plot styles
    2. Plot view
    3. Labelling and annotation
    4. Colour modes
  12. Input and Output options
    1. Crystallographic input
    2. Graphical output
    3. Crystallographic output
  13. File formats
    1. FDAT format specification
    2. COOR format specification
    3. Free format specification
  14. Multiple structure display
  15. Graphics configuration options